Third qualifying round (August 10, 1999 to August 25, 1999)
Dortmund won on aggregate score over two legs and advance to First group stage.
Aug 11
Fiorentina
Widzew Łódź
Aug 25
Widzew Łódź
Fiorentina
Fiorentina won on aggregate score over two legs and advance to First group stage.
Aug 11
Zimbru Chișinău
PSV
Aug 25
PSV
Zimbru Chișinău
PSV won on aggregate score over two legs and advance to First group stage.
Molde won on away goals, after aggregate score was tied and advance to First group stage.
Aug 11
Sturm Graz
Servette
Aug 25
Servette
Sturm Graz
Sturm Graz won on aggregate score over two legs and advance to First group stage.
Aug 11
Aalborg
Dynamo Kyiv
Aug 25
Dynamo Kyiv
Aalborg
Dynamo Kyiv won on aggregate score over two legs and advance to First group stage.
Chelsea won on aggregate score over two legs and advance to First group stage.
Aug 11
Hapoel Haifa FC
Valencia
Aug 25
Valencia
Hapoel Haifa FC
Valencia won on aggregate score over two legs and advance to First group stage.
Aug 11
Rapid Wien
Galatasaray
Aug 25
Galatasaray
Rapid Wien
Galatasaray won on aggregate score over two legs and advance to First group stage.
Boavista won on aggregate score over two legs, after extra time and advance to First group stage.
Aug 11
Hertha BSC
Anorthosis
Aug 25
Anorthosis
Hertha BSC
Hertha BSC won on aggregate score over two legs and advance to First group stage.
Aug 11
AEK Athens
AIK Stockholm
Aug 25
AIK Stockholm
AEK Athens
AIK Stockholm won on aggregate score over two legs and advance to First group stage.
NK Maribor won on aggregate score over two legs and advance to First group stage.
Aug 11
Spartak Moscow
Partizan
Aug 25
Partizan
Spartak Moscow
Spartak Moscow won on aggregate score over two legs and advance to First group stage.
Aug 11
Dinamo Zagreb
MTK Budapest
Aug 25
MTK Budapest
Dinamo Zagreb
Dinamo Zagreb won on aggregate score over two legs and advance to First group stage.
Rangers won on aggregate score over two legs and advance to First group stage.
Second qualifying round (July 28, 1999 to August 4, 1999)
Jul 28
Rapid București
Skonto FC
Aug 4
Skonto FC
Rapid București
Skonto FC won on aggregate score over two legs and advance to Third qualifying round.
Jul 28
Beşiktaş
Hapoel Haifa FC
Aug 4
Hapoel Haifa FC
Beşiktaş
Hapoel Haifa FC won on away goals, after aggregate score was tied and advance to Third qualifying round.
NK Maribor won on aggregate score over two legs and advance to Third qualifying round.
Partizan won on aggregate score over two legs and advance to Third qualifying round.
Jul 28
Rapid Wien
Valletta FC
Aug 4
Valletta FC
Rapid Wien
Rapid Wien won on aggregate score over two legs and advance to Third qualifying round.
Jul 28
Dnepr Mogilev
AIK Stockholm
Aug 4
AIK Stockholm
Dnepr Mogilev
AIK Stockholm won on aggregate score over two legs and advance to Third qualifying round.
Jul 28
Dynamo Kyiv
Žalgiris
Aug 4
Žalgiris
Dynamo Kyiv
Dynamo Kyiv won on aggregate score over two legs and advance to Third qualifying round.
Jul 28
Litex Lovech
Widzew Łódź
Aug 4
Widzew Łódź
Litex Lovech
Widzew Łódź won on penalty kicks following extra time and advance to Third qualifying round.
Rangers won on aggregate score over two legs and advance to Third qualifying round.
Jul 28
Anorthosis
ŠK Slovan Bratislava
Aug 4
ŠK Slovan Bratislava
Anorthosis
Anorthosis won on aggregate score over two legs and advance to Third qualifying round.
Brøndby won on aggregate score over two legs and advance to Third qualifying round.
MTK Budapest won on aggregate score over two legs and advance to Third qualifying round.
Jul 28
Dinamo Tbilisi
Zimbru Chișinău
Aug 4
Zimbru Chișinău
Dinamo Tbilisi
Zimbru Chișinău won on aggregate score over two legs and advance to Third qualifying round.
Molde won on aggregate score over two legs and advance to Third qualifying round.
First qualifying round (July 13, 1999 to July 21, 1999)
Jul 14
Havnar Bóltfelag
Haka
Jul 21
Haka
Havnar Bóltfelag
Haka won on aggregate score over two legs and advance to Second qualifying round.
Partizan won on aggregate score over two legs and advance to Second qualifying round.
Sloga won on away goals, after aggregate score was tied and advance to Second qualifying round.
ÍBV won on aggregate score over two legs and advance to Second qualifying round.
Jul 14
St Patrick's
Zimbru Chișinău
Jul 21
Zimbru Chișinău
St Patrick's
Zimbru Chișinău won on aggregate score over two legs and advance to Second qualifying round.
Jul 14
Žalgiris
Araks Ararat FC
Jul 21
Araks Ararat FC
Žalgiris
Žalgiris won on aggregate score over two legs and advance to Second qualifying round.
Jul 14
Barry Town
Valletta FC
Jul 21
Valletta FC
Barry Town
Valletta FC won on aggregate score over two legs and advance to Second qualifying round.
Jul 14
Litex Lovech
Glentoran
Jul 21
Glentoran
Litex Lovech
Litex Lovech won on aggregate score over two legs and advance to Second qualifying round.
Jul 14
Jeunesse Esch
Skonto FC
Jul 21
Skonto FC
Jeunesse Esch
Skonto FC won on aggregate score over two legs and advance to Second qualifying round.
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